Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LCGL_0282Mevalonate diphosphate decarboxylase. (315 aa)    
Predicted Functional Partners:
LCGL_0283
Mevalonate kinase.
 
 
 0.999
fni
Isopentenyl diphosphate delta isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.998
LCGL_0279
Mevalonate kinase.
 
  
 0.972
LCGL_1243
hydroxymethylglutaryl-CoA synthase.
 
 
 0.963
LCGL_1241
hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family.
 
  
 0.955
LCGL_0596
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.949
LCGL_1354
Conserved hypothetical protein.
      
 0.637
LCGL_0285
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
       0.608
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
 
    0.603
LCGL_0096
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 
 0.568
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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