Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0323Putative hemolysin. (217 aa)    
Predicted Functional Partners:
LCGL_0597
Putative hemolysin.
     
 0.766
LCGL_1917
Conserved hypothetical protein.
   
 0.763
LCGL_0324
Conserved hypothetical protein.
 
   
 0.711
LCGL_0326
Conserved hypothetical protein.
       0.662
LCGL_0325
Conserved hypothetical protein.
       0.657
LCGL_0374
Putative hemolysin.
     
 0.610
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.540
LCGL_1953
Signal peptidase I; Belongs to the peptidase S26 family.
     
 0.439
msrB
Methionine sulfoxide reductase.
  
  
 0.429
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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