Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0368ABC transporter permease component. (256 aa)    
Predicted Functional Partners:
LCGL_0367
ABC transporter ATP-binding component.
  
 0.975
LCGL_0365
Conserved hypothetical protein.
       0.779
rnmV
Conserved hypothetical protein; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
       0.773
LCGL_1564
Transcription regulator.
  
  
 0.509
LCGL_1936
ABC transporter ATP-binding component.
  
  
 0.490
LCGL_0364
Conserved hypothetical protein; Belongs to the ArsC family.
       0.486
LCGL_1769
Conserved hypothetical protein.
  
  
 0.486
LCGL_0095
Nitroreductase.
  
  
 0.482
LCGL_0656
Oxidoreductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.482
LCGL_1797
Nitroreductase.
  
  
 0.482
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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