LCGL_0398 protein (Lactococcus garvieae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LCGL_0398

Conserved hypothetical protein. (151 aa)

Predicted Functional Partners:

LCGL_0397

0.999

LCGL_0396

0.995

LCGL_0399

0.988

LCGL_0395

0.973

LCGL_1626

0.965

LCGL_0328

0.937

LCGL_0303

0.891

dnaK

0.884

LCGL_0625

0.739

LCGL_0938

0.644

Your Current Organism:

Lactococcus garvieae

NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LCGL_0303	LCGL_0328	LCGL_0303	LCGL_0328	Pyruvate-flavodoxin oxidoreductase.	Cysteine desulphurase.	0.657
LCGL_0303	LCGL_0395	LCGL_0303	LCGL_0395	Pyruvate-flavodoxin oxidoreductase.	ABC transporter ATP-binding component.	0.526
LCGL_0303	LCGL_0397	LCGL_0303	LCGL_0397	Pyruvate-flavodoxin oxidoreductase.	Conserved hypothetical protein; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.	0.686
LCGL_0303	LCGL_0398	LCGL_0303	LCGL_0398	Pyruvate-flavodoxin oxidoreductase.	Conserved hypothetical protein.	0.891
LCGL_0303	LCGL_0938	LCGL_0303	LCGL_0938	Pyruvate-flavodoxin oxidoreductase.	Conserved hypothetical protein.	0.456
LCGL_0303	LCGL_1626	LCGL_0303	LCGL_1626	Pyruvate-flavodoxin oxidoreductase.	Aminotransferase.	0.657
LCGL_0303	dnaK	LCGL_0303	LCGL_0422	Pyruvate-flavodoxin oxidoreductase.	Heat shock protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.787
LCGL_0328	LCGL_0303	LCGL_0328	LCGL_0303	Cysteine desulphurase.	Pyruvate-flavodoxin oxidoreductase.	0.657
LCGL_0328	LCGL_0398	LCGL_0328	LCGL_0398	Cysteine desulphurase.	Conserved hypothetical protein.	0.937
LCGL_0328	LCGL_0938	LCGL_0328	LCGL_0938	Cysteine desulphurase.	Conserved hypothetical protein.	0.647
LCGL_0328	LCGL_1626	LCGL_0328	LCGL_1626	Cysteine desulphurase.	Aminotransferase.	0.914
LCGL_0328	dnaK	LCGL_0328	LCGL_0422	Cysteine desulphurase.	Heat shock protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.688
LCGL_0395	LCGL_0303	LCGL_0395	LCGL_0303	ABC transporter ATP-binding component.	Pyruvate-flavodoxin oxidoreductase.	0.526
LCGL_0395	LCGL_0396	LCGL_0395	LCGL_0396	ABC transporter ATP-binding component.	Conserved hypothetical protein.	0.999
LCGL_0395	LCGL_0397	LCGL_0395	LCGL_0397	ABC transporter ATP-binding component.	Conserved hypothetical protein; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.	0.996
LCGL_0395	LCGL_0398	LCGL_0395	LCGL_0398	ABC transporter ATP-binding component.	Conserved hypothetical protein.	0.973
LCGL_0395	LCGL_0399	LCGL_0395	LCGL_0399	ABC transporter ATP-binding component.	Conserved hypothetical protein.	0.998
LCGL_0395	LCGL_0625	LCGL_0395	LCGL_0625	ABC transporter ATP-binding component.	Conserved hypothetical protein.	0.765
LCGL_0396	LCGL_0395	LCGL_0396	LCGL_0395	Conserved hypothetical protein.	ABC transporter ATP-binding component.	0.999
LCGL_0396	LCGL_0397	LCGL_0396	LCGL_0397	Conserved hypothetical protein.	Conserved hypothetical protein; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.	0.998