Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0432Transcription regulator EpsR. (105 aa)    
Predicted Functional Partners:
LCGL_0433
Conserved hypothetical protein EpsX.
       0.661
LCGL_0434
Chain length regulator EpsA.
       0.553
LCGL_0435
Kinase EpsB.
       0.546
LCGL_0436
Phosphatase EpsC.
       0.436
LCGL_0431
Transposase.
       0.407
LCGL_0437
Sugar transferase EpsD.
       0.404
LCGL_0438
Putative glycosyltransferase.
       0.404
LCGL_0439
Glycosyltransferase.
       0.404
LCGL_0440
Acetyltransferase.
       0.404
LCGL_0441
Glycosyltransferase.
       0.404
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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