Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0571Conserved hypothetical protein. (425 aa)    
Predicted Functional Partners:
LCGL_0572
ABC transporter ATP-binding component.
  
 
 0.873
LCGL_0570
Hypothetical protein.
       0.773
LCGL_0569
Hypothetical protein.
       0.629
LCGL_1465
ABC transporter ATP-binding and permease components.
  
 
 0.581
LCGL_0465
ABC transporter ATP-binding component.
  
 
 0.511
LCGL_0009
Conserved hypothetical protein.
   
    0.496
LCGL_1738
ABC transporter ATP-binding component.
  
 
 0.469
LCGL_1819
ABC transporter ATP-binding component.
  
 
 0.469
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
  
    0.462
LCGL_0836
ABC transporter ATP-binding component.
  
 
 0.455
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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