Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0589Truncated transcription regulator. (119 aa)    
Predicted Functional Partners:
LCGL_0588
Truncated transcription regulator.
     0.955
LCGL_0592
Glycosyl hydrolase.
 
     0.756
LCGL_0591
Truncated fructose-specific PTS system IIABC components.
 
   
 0.686
LCGL_0590
Truncated fructose-specific PTS system IIABC components.
 
   
 0.665
LCGL_0593
Sucrose phosphorylase.
 
    0.602
LCGL_1585
Cell surface protein.
  
     0.502
LCGL_1342
Conserved hypothetical protein.
  
     0.453
LCGL_0862
Hypothetical protein.
  
     0.434
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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