Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LCGL_0614Two-component response regulator. (131 aa)    
Predicted Functional Partners:
LCGL_0615
Two-component sensor kinase.
 
 
 0.967
LCGL_1174
Two-component system sensor kinase.
 
 
 0.870
LCGL_0430
Two-component sensor kinase.
 
 
 0.853
LCGL_0524
Two-component system sensor kinase.
 
 
 0.851
LCGL_0270
Two-component sensor kinase.
 
 
 0.846
LCGL_0613
Conserved hypothetical protein.
       0.773
LCGL_1582
Two-component sensor kinase.
 
 
 0.753
LCGL_0469
Two-component system sensor kinase.
 
 
 0.701
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
   0.564
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.475
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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