Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LCGL_0650Conserved hypothetical protein. (87 aa)    
Predicted Functional Partners:
LCGL_0647
Conserved hypothetical protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
  
    0.760
mapZ
Conserved hypothetical protein; Early cell division protein that marks the future cell division site and supports proper FtsZ ring positioning.
  
    0.689
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
  
    0.689
LCGL_0649
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
       0.677
LCGL_1783
Conserved hypothetical protein.
  
     0.620
LCGL_1157
Hypothetical phage protein.
  
     0.596
LCGL_0654
Replication protein DnaB.
 
     0.567
LCGL_1299
Conserved hypothetical protein.
  
     0.545
LCGL_0760
Conserved hypothetical protein.
  
     0.538
prsA
Maturation protein; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins.
 
     0.506
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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