Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0658Truncated transcriptional antiterminator. (162 aa)    
Predicted Functional Partners:
LCGL_0659
Truncated transcriptional antiterminator.
     0.970
LCGL_0660
Sugar-specific PTS component EIIB component.
 
    0.891
LCGL_0661
Sugar-specific PTS component EIIC component.
 
     0.817
LCGL_1084
Conserved hypothetical protein.
  
     0.588
LCGL_0717
Long-chain acyl-CoA synthetase.
  
     0.564
LCGL_1044
Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
     0.532
LCGL_1043
Chitin binding protein.
  
     0.526
LCGL_0657
Conserved hypothetical protein.
       0.438
LCGL_0654
Replication protein DnaB.
 
     0.407
LCGL_0662
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
    0.405
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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