Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0660Sugar-specific PTS component EIIB component. (99 aa)    
Predicted Functional Partners:
LCGL_0661
Sugar-specific PTS component EIIC component.
 
 
 0.997
LCGL_0659
Truncated transcriptional antiterminator.
 
  
 0.971
LCGL_0064
Phosphocarrier protein Hpr.
    
 0.909
LCGL_0658
Truncated transcriptional antiterminator.
 
    0.891
LCGL_0662
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
 
  
 0.637
LCGL_0426
Fructose-specific PTS system enzyme IIABC components.
  
  
 0.574
LCGL_0590
Truncated fructose-specific PTS system IIABC components.
  
  
 0.574
LCGL_0591
Truncated fructose-specific PTS system IIABC components.
  
  
 0.574
LCGL_0578
Sucrose-specific PTS system IIBC components.
     
 0.487
LCGL_1046
N-acetylglucosamine-specific PTS system IIABC components.
     
 0.487
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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