Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0700Conserved hypothetical protein. (745 aa)    
Predicted Functional Partners:
LCGL_1859
Glycosyltransferase.
    
 0.930
LCGL_0705
Conserved hypothetical protein.
 
     0.889
LCGL_0704
Conserved hypothetical protein.
 
     0.888
LCGL_0702
Conserved hypothetical protein.
  
    0.805
LCGL_0703
Conserved hypothetical protein.
  
    0.796
LCGL_0701
Hypothetical protein.
       0.773
prsA
Maturation protein; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins.
 
   
 0.716
LCGL_1754
Conserved hypothetical protein.
  
     0.678
LCGL_0334
Conserved hypothetical protein; Belongs to the UPF0398 family.
  
     0.637
LCGL_0748
Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
   
 0.631
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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