LCGL_0716 protein (Lactococcus garvieae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LCGL_0716

1,4-dihydroxy-2-naphthoate octaprenyltransferase. (319 aa)

Predicted Functional Partners:

LCGL_1355

0.918

LCGL_0715

0.883

LCGL_0096

0.793

LCGL_1354

0.734

LCGL_1467

0.652

LCGL_1313

0.621

LCGL_1468

0.621

LCGL_1353

0.553

LCGL_0632

0.547

LCGL_0247

0.466

Your Current Organism:

Lactococcus garvieae

NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
LCGL_0096	LCGL_0715	Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.	NADH dehydrogenase.	0.797
LCGL_0096	LCGL_0716	Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.	1,4-dihydroxy-2-naphthoate octaprenyltransferase.	0.793
LCGL_0096	LCGL_1353	Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.	Conserved hypothetical protein.	0.486
LCGL_0096	LCGL_1354	Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.	Conserved hypothetical protein.	0.856
LCGL_0096	LCGL_1467	Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.	Cytochrome D ABC transporter ATP-binding and permease components.	0.716
LCGL_0096	LCGL_1468	Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.	Cytochrome D ABC transporter ATP-binding and permease components.	0.682
LCGL_0247	LCGL_0715	Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	NADH dehydrogenase.	0.497
LCGL_0247	LCGL_0716	Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	1,4-dihydroxy-2-naphthoate octaprenyltransferase.	0.466
LCGL_0247	LCGL_1353	Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	Conserved hypothetical protein.	0.555
LCGL_0247	LCGL_1354	Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	Conserved hypothetical protein.	0.732
LCGL_0632	LCGL_0716	Conserved hypothetical protein.	1,4-dihydroxy-2-naphthoate octaprenyltransferase.	0.547
LCGL_0715	LCGL_0096	NADH dehydrogenase.	Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.	0.797
LCGL_0715	LCGL_0247	NADH dehydrogenase.	Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	0.497
LCGL_0715	LCGL_0716	NADH dehydrogenase.	1,4-dihydroxy-2-naphthoate octaprenyltransferase.	0.883
LCGL_0715	LCGL_1313	NADH dehydrogenase.	Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	0.713
LCGL_0715	LCGL_1353	NADH dehydrogenase.	Conserved hypothetical protein.	0.817
LCGL_0715	LCGL_1354	NADH dehydrogenase.	Conserved hypothetical protein.	0.841
LCGL_0715	LCGL_1355	NADH dehydrogenase.	Heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family.	0.817
LCGL_0715	LCGL_1467	NADH dehydrogenase.	Cytochrome D ABC transporter ATP-binding and permease components.	0.547
LCGL_0715	LCGL_1468	NADH dehydrogenase.	Cytochrome D ABC transporter ATP-binding and permease components.	0.518