Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0733Conserved hypothetical protein. (238 aa)    
Predicted Functional Partners:
LCGL_0732
Multidrug transporter protein; Belongs to the major facilitator superfamily.
 
  
 0.903
LCGL_0731
Transcription regulator.
     
 0.803
LCGL_0654
Replication protein DnaB.
  
     0.535
LCGL_1465
ABC transporter ATP-binding and permease components.
  
     0.513
LCGL_0148
Preprotein translocase subunit SecE; Belongs to the SecE/SEC61-gamma family.
  
     0.474
pepX
X-prolyl dipeptidyl aminopeptidase; Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline; Belongs to the peptidase S15 family.
  
     0.474
LCGL_0763
Conserved hypothetical protein.
  
     0.474
LCGL_1723
Transcription regulator.
  
     0.472
LCGL_0734
Conserved hypothetical protein.
       0.465
LCGL_0132
Conserved hypothetical protein.
  
     0.460
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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