Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LCGL_0744Amino acid ABC transporter permease component. (295 aa)    
Predicted Functional Partners:
LCGL_0745
Amino acid ABC transporter ATP-binding component.
 0.999
LCGL_0743
Amino acid ABC transporter substrate-binding component.
 0.998
LCGL_0933
ABC transporter substrate-binding component.
 0.992
LCGL_0454
Glutamine ABC transporter ATP-binding component.
 
 0.948
LCGL_0450
Amino acid ABC transporter ATP-binding component.
 
 0.940
LCGL_0277
ABC transporter substrate-binding subunit.
 
 0.932
LCGL_0245
Amino acid ABC transporter substrate-binding subunit.
 
 
 0.895
LCGL_0746
Conserved hypothetical protein.
       0.842
LCGL_0455
Glutamine ABC transporter permease and substrate-binding components.
 
0.716
LCGL_0329
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
  
 0.643
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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