Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0786Conserved hypothetical protein. (432 aa)    
Predicted Functional Partners:
LCGL_0785
Conserved hypothetical protein.
     
 0.805
LCGL_0784
Hypothetical protein.
       0.693
LCGL_0787
Conserved hypothetical protein.
     
 0.674
rpoE
DNA-directed RNA polymerase delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
 
     0.624
LCGL_0799
Competence protein ComFA.
  
     0.620
LCGL_1878
GTP-binding protein.
  
     0.546
LCGL_1368
ABC transporter ATP-binding component.
  
    0.531
LCGL_0788
Conserved hypothetical protein.
       0.494
LCGL_1017
Deoxynucleoside kinase.
    
 
 0.444
LCGL_1654
Deoxynucleoside kinase.
    
 
 0.444
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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