Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0798Competence protein ComFC. (214 aa)    
Predicted Functional Partners:
LCGL_0799
Competence protein ComFA.
 
  
 0.976
LCGL_1069
DNA processing protein.
 
 
 0.890
LCGL_0404
Competence protein ComEC.
 
  
 0.866
LCGL_0800
Conserved hypothetical protein.
       0.707
LCGL_0402
Competence protein ComEA.
  
  
 0.678
LCGL_0137
Competence protein.
 
  
 0.603
LCGL_1019
DNA repair protein; Belongs to the UPF0758 family.
 
    0.560
LCGL_0902
dCMP deaminase.
   
  
 0.556
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
   
  
 0.552
LCGL_0136
Competence protein.
  
  
 0.544
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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