Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0808Conserved hypothetical protein. (488 aa)    
Predicted Functional Partners:
LCGL_0578
Sucrose-specific PTS system IIBC components.
  
 
 0.626
LCGL_1046
N-acetylglucosamine-specific PTS system IIABC components.
  
 
 0.626
LCGL_1667
Beta-glucoside-specific PTS system IIABC components.
  
 
 0.626
LCGL_0810
Glycerol-3-phosphate dehydrogenase.
 
     0.622
LCGL_1661
Conserved hypothetical protein.
  
     0.602
LCGL_0710
Conserved hypothetical protein.
  
     0.563
LCGL_1370
Conserved hypothetical protein.
  
     0.543
LCGL_0734
Conserved hypothetical protein.
  
     0.470
LCGL_0807
Chloride channel protein.
       0.468
LCGL_0426
Fructose-specific PTS system enzyme IIABC components.
  
  
 0.460
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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