Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0859Conserved hypothetical protein. (342 aa)    
Predicted Functional Partners:
LCGL_0860
Phosphatase.
  
    0.571
mtlD
Mannitol 1-phosphate 5-dehydrogenase.
       0.533
LCGL_0554
Cell division protein FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
  
 
 0.471
LCGL_0643
Conserved hypothetical protein.
  
 
 0.453
LCGL_0388
Endopeptidase.
  
    0.442
LCGL_0837
ABC transporter permease component.
   
 
 0.435
smc
Chromosome segregation SMC protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.432
LCGL_1309
ATP-dependent DNA helicase.
 
 
 
 0.401
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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