Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0892Conserved hypothetical protein. (141 aa)    
Predicted Functional Partners:
LCGL_0893
Conserved hypothetical protein.
 
     0.896
LCGL_1340
Conserved hypothetical protein.
  
     0.697
LCGL_0895
Conserved hypothetical protein.
 
     0.656
LCGL_1184
Conserved hypothetical protein.
  
     0.651
LCGL_1291
Conserved hypothetical protein.
  
     0.632
LCGL_0055
Conserved hypothetical protein.
  
     0.604
LCGL_1100
Conserved hypothetical protein.
  
     0.601
LCGL_0464
Conserved hypothetical protein.
  
     0.580
LCGL_1662
Conserved hypothetical protein.
  
     0.577
LCGL_1896
Conserved hypothetical protein.
  
     0.572
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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