Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0901Conserved hypothetical protein. (111 aa)    
Predicted Functional Partners:
LCGL_0902
dCMP deaminase.
       0.773
LCGL_1431
Arsenical pump-driving ATPase.
  
     0.748
LCGL_1432
Arsenical resistance operon trans-acting repressor.
  
     0.746
LCGL_0900
NADH dehydrogenase.
       0.540
LCGL_0903
acyl-ACP thioesterase.
       0.506
LCGL_0904
Phosphatase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.
       0.506
LCGL_0905
Conserved hypothetical protein.
       0.506
LCGL_0899
Conserved hypothetical protein.
       0.496
LCGL_0702
Conserved hypothetical protein.
  
     0.430
LCGL_0703
Conserved hypothetical protein.
  
     0.416
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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