Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0908Transcription regulator. (275 aa)    
Predicted Functional Partners:
LCGL_1380
Conserved hypothetical protein.
  
     0.713
LCGL_1769
Conserved hypothetical protein.
  
    0.681
LCGL_1662
Conserved hypothetical protein.
 
     0.650
LCGL_0384
Putative transcription regulator.
  
     0.643
LCGL_0710
Conserved hypothetical protein.
  
    0.631
LCGL_0132
Conserved hypothetical protein.
  
     0.630
LCGL_1140
Hypothetical phage protein.
 
    0.626
LCGL_1253
Exopolysaccharide biosynthesis protein EpsL.
  
     0.616
LCGL_0055
Conserved hypothetical protein.
  
     0.605
LCGL_0214
Conserved hypothetical protein.
   
    0.604
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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