Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0912Conserved hypothetical protein. (265 aa)    
Predicted Functional Partners:
LCGL_0910
Conserved hypothetical protein.
 
    0.952
LCGL_0911
Glycosyltransferase.
 
  
 0.952
LCGL_0909
Conserved hypothetical protein.
 
  
 0.789
LCGL_0974
Conserved hypothetical protein.
 
  
 0.641
LCGL_0667
Conserved hypothetical protein.
  
     0.523
LCGL_1064
Conserved hypothetical protein.
  
     0.487
LCGL_0913
Conserved hypothetical protein.
       0.481
LCGL_1784
Conserved hypothetical protein.
  
     0.480
LCGL_0914
Truncated sodium/hydrogen antiporter.
       0.478
LCGL_0643
Conserved hypothetical protein.
  
    0.460
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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