Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0984Conserved hypothetical protein. (126 aa)    
Predicted Functional Partners:
LCGL_0331
Conserved hypothetical protein.
  
 0.912
LCGL_0362
Glyoxalase family protein.
  
  
  0.912
LCGL_1745
Conserved hypothetical protein.
     
  0.900
LCGL_1832
Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
   
 
 0.807
LCGL_0718
L-serine deaminase beta subunit; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
  0.800
LCGL_0719
L-serine dehydratase alpha subunit; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
  0.800
LCGL_1889
Conserved hypothetical protein.
  
     0.604
LCGL_1542
Conserved hypothetical protein.
 
   
 0.553
LCGL_1031
Conserved hypothetical protein.
  
    0.551
LCGL_0710
Conserved hypothetical protein.
  
     0.525
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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