Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_1174Two-component system sensor kinase. (526 aa)    
Predicted Functional Partners:
LCGL_1173
Two-component system regulator protein.
 
 
 0.971
LCGL_0614
Two-component response regulator.
 
 
 0.870
LCGL_0271
Two-component response regulator.
 
 
 0.866
LCGL_0523
Two-component system regulator protein.
 
 
 0.861
LCGL_0429
Two-component response regulator.
 
 
 0.860
LCGL_0468
Two-component system regulator protein.
 
 
 0.840
LCGL_1583
Two-component response regulator protein.
 
 
 0.833
LCGL_1465
ABC transporter ATP-binding and permease components.
  
 
 0.542
LCGL_0303
Pyruvate-flavodoxin oxidoreductase.
   
 
 0.535
LCGL_1172
Conserved hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
    0.521
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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