Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LCGL_1176Nucleoside-binding protein. (350 aa)    
Predicted Functional Partners:
LCGL_1331
Sugar ABC transporter ATP-binding component.
 
 
 0.982
LCGL_1333
Sugar ABC transporter permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.975
LCGL_1332
Sugar ABC transporter permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.972
LCGL_0175
Conserved hypothetical protein.
  
  
 
0.901
LCGL_1862
Conserved hypothetical protein.
  
  
 
0.901
LCGL_1175
Transcription regulator.
  
    0.595
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
  
  
 0.560
LCGL_1177
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
     
 0.532
LCGL_1180
Pyrimidine-nucleoside phosphorylase.
     
 0.482
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.444
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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