Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_1245Transcription regulator. (237 aa)    
Predicted Functional Partners:
LCGL_1246
Conserved hypothetical protein.
 
    0.616
LCGL_1247
Oxidoreductase.
  
    0.559
LCGL_1723
Transcription regulator.
   
    0.552
LCGL_1667
Beta-glucoside-specific PTS system IIABC components.
 
  
 0.518
LCGL_1244
Short chain dehydrogenase.
       0.508
LCGL_1077
Conserved hypothetical protein.
  
    0.456
LCGL_0578
Sucrose-specific PTS system IIBC components.
  
  
 0.452
LCGL_1046
N-acetylglucosamine-specific PTS system IIABC components.
  
  
 0.452
LCGL_0562
Catabolite control protein A.
  
   
 0.430
LCGL_0966
Ribose operon repressor.
  
   
 0.417
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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