Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_1374Conserved hypothetical protein. (201 aa)    
Predicted Functional Partners:
LCGL_1375
Conserved hypothetical protein.
     
 0.899
LCGL_1859
Glycosyltransferase.
 
  
 0.793
LCGL_1376
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
     
 0.779
LCGL_1380
Conserved hypothetical protein.
 
     0.660
LCGL_1377
Conserved hypothetical protein.
       0.569
LCGL_1379
Two-component system sensor kinase.
 
     0.538
LCGL_1373
Cell division protein; Belongs to the SEDS family.
     
 0.527
LCGL_1378
Two-component system regulator protein.
 
     0.522
LCGL_1340
Conserved hypothetical protein.
  
     0.511
LCGL_1223
Conserved hypothetical protein.
 
     0.489
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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