Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_1593Flavoprotein. (232 aa)    
Predicted Functional Partners:
LCGL_1594
Flavoprotein.
 
 
 0.997
coaA
Pantothenate kinase.
   
 
 0.935
LCGL_1595
Conserved hypothetical protein.
 
     0.874
LCGL_0329
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
  0.813
LCGL_1056
Cystathionine gamma-synthase.
   
 
  0.807
LCGL_0623
Aminotransferase.
    
  0.801
LCGL_1596
Phosphoglucomutase.
     
 0.652
LCGL_1650
rRNA methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
    0.560
LCGL_0085
Deoxyuridine 5'-triphosphate nucleotidhydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
  
  
 0.529
LCGL_1592
Conserved hypothetical protein; Belongs to the UPF0597 family.
       0.529
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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