Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_1734Conserved hypothetical protein. (131 aa)    
Predicted Functional Partners:
LCGL_1735
Conserved hypothetical protein.
       0.779
LCGL_1733
ABC transporter ATP-binding component.
  
  
 0.766
LCGL_1732
ABC transporter permease component.
     
 0.761
LCGL_1910
Glutamine synthetase.
  
   0.634
udk
Uridine kinase.
   
  0.555
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
 
 0.537
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
 
    0.471
LCGL_0404
Competence protein ComEC.
 
     0.467
prsA
Maturation protein; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins.
  
   0.451
LCGL_0303
Pyruvate-flavodoxin oxidoreductase.
   
   0.447
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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