Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LCGL_1963Penicillin-binding protein 3; Belongs to the peptidase S11 family. (428 aa)    
Predicted Functional Partners:
LCGL_0208
Penicillin-binding protein 2B.
  
 
 0.958
LCGL_0611
Penicillin-binding protein 2X.
  
 
 0.957
LCGL_0145
Penicillin-binding protein 2a.
  
 
 0.943
LCGL_0257
Penicillin-binding protein 1B.
  
 
 0.941
LCGL_0297
Penicillin-binding protein 1A/1B.
  
 
 0.936
LCGL_0332
Penicillin-binding protein 1A.
  
 
 0.936
LCGL_0418
D-alanyl-D-alanine carboxypeptidase.
    
 0.914
rlmH
Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
  
 0.715
LCGL_0216
Oligopeptide ABC transporter substrate-binding subunit.
     
 0.440
dacA
Conserved hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
      
 0.433
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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