STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtPDiapolycopene oxygenase. (512 aa)    
Predicted Functional Partners:
CTQ48055.1
Hydroxyneurosporene synthase (CrtC).
 
 
 0.968
crtM_1
Dehydrosqualene synthase.
 
 
 0.952
crtM_2
Dehydrosqualene synthase.
 
 
 0.951
crtF
Demethylspheroidene O-methyltransferase.
 
 
 0.930
CTQ49455.1
Lycopene cyclase.
 
 
 0.884
CTQ50607.1
Squalene synthase HpnD.
  
 
 0.831
CTQ48057.1
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.817
yjjN_1
Putative L-galactonate oxidoreductase.
 
  
 0.798
chlB
Light-independent protochlorophyllide reductase subunit B.
 
  
 0.744
CTQ48061.1
Light-independent protochlorophyllide reductase subunit N.
 
    0.736
Your Current Organism:
Jannaschia donghaensis
NCBI taxonomy Id: 420998
Other names: J. donghaensis, JCM 14563, Jannaschia donghaensis Yoon et al. 2007, KCTC 12862, strain DSW-17
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