Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CTQ48119.1 | CTQ48121.1 | JDO7802_00121 | JDO7802_00123 | Putative lipoprotein. | Hypothetical protein; Belongs to the UPF0102 family. | 0.804 |
CTQ48119.1 | glnD | JDO7802_00121 | JDO7802_00120 | Putative lipoprotein. | PII uridylyl-transferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.761 |
CTQ48119.1 | gshB | JDO7802_00121 | JDO7802_00124 | Putative lipoprotein. | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | 0.659 |
CTQ48119.1 | murJ | JDO7802_00121 | JDO7802_00965 | Putative lipoprotein. | Putative peptidoglycan biosynthesis protein MurJ; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | 0.463 |
CTQ48119.1 | rsmI | JDO7802_00121 | JDO7802_00122 | Putative lipoprotein. | Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.786 |
CTQ48121.1 | CTQ48119.1 | JDO7802_00123 | JDO7802_00121 | Hypothetical protein; Belongs to the UPF0102 family. | Putative lipoprotein. | 0.804 |
CTQ48121.1 | CTQ48752.1 | JDO7802_00123 | JDO7802_00757 | Hypothetical protein; Belongs to the UPF0102 family. | Flagellar motor switch protein FliM. | 0.501 |
CTQ48121.1 | CTQ49699.1 | JDO7802_00123 | JDO7802_01715 | Hypothetical protein; Belongs to the UPF0102 family. | Flagellar hook-associated protein FlgL. | 0.505 |
CTQ48121.1 | CTQ51169.1 | JDO7802_00123 | JDO7802_03207 | Hypothetical protein; Belongs to the UPF0102 family. | Staphylococcal accessory regulator family protein. | 0.459 |
CTQ48121.1 | cph2_2 | JDO7802_00123 | JDO7802_02033 | Hypothetical protein; Belongs to the UPF0102 family. | Bacteriophytochrome cph2. | 0.504 |
CTQ48121.1 | glnD | JDO7802_00123 | JDO7802_00120 | Hypothetical protein; Belongs to the UPF0102 family. | PII uridylyl-transferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. | 0.672 |
CTQ48121.1 | gshB | JDO7802_00123 | JDO7802_00124 | Hypothetical protein; Belongs to the UPF0102 family. | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | 0.742 |
CTQ48121.1 | murJ | JDO7802_00123 | JDO7802_00965 | Hypothetical protein; Belongs to the UPF0102 family. | Putative peptidoglycan biosynthesis protein MurJ; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | 0.463 |
CTQ48121.1 | rsmI | JDO7802_00123 | JDO7802_00122 | Hypothetical protein; Belongs to the UPF0102 family. | Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.873 |
CTQ48121.1 | yedQ | JDO7802_00123 | JDO7802_02341 | Hypothetical protein; Belongs to the UPF0102 family. | Putative diguanylate cyclase YedQ. | 0.451 |
CTQ48752.1 | CTQ48121.1 | JDO7802_00757 | JDO7802_00123 | Flagellar motor switch protein FliM. | Hypothetical protein; Belongs to the UPF0102 family. | 0.501 |
CTQ48752.1 | CTQ49699.1 | JDO7802_00757 | JDO7802_01715 | Flagellar motor switch protein FliM. | Flagellar hook-associated protein FlgL. | 0.948 |
CTQ48752.1 | CTQ51169.1 | JDO7802_00757 | JDO7802_03207 | Flagellar motor switch protein FliM. | Staphylococcal accessory regulator family protein. | 0.503 |
CTQ48752.1 | cph2_2 | JDO7802_00757 | JDO7802_02033 | Flagellar motor switch protein FliM. | Bacteriophytochrome cph2. | 0.776 |
CTQ48752.1 | yedQ | JDO7802_00757 | JDO7802_02341 | Flagellar motor switch protein FliM. | Putative diguanylate cyclase YedQ. | 0.459 |
page 1 of 3