Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CTQ48582.1 | CTQ48584.1 | JDO7802_00585 | JDO7802_00587 | Hypothetical protein. | Zc3h12a-like Ribonuclease NYN domain protein. | 0.420 |
CTQ48582.1 | trpA | JDO7802_00585 | JDO7802_00586 | Hypothetical protein. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.450 |
CTQ48584.1 | CTQ48582.1 | JDO7802_00587 | JDO7802_00585 | Zc3h12a-like Ribonuclease NYN domain protein. | Hypothetical protein. | 0.420 |
CTQ48584.1 | CTQ48752.1 | JDO7802_00587 | JDO7802_00757 | Zc3h12a-like Ribonuclease NYN domain protein. | Flagellar motor switch protein FliM. | 0.486 |
CTQ48584.1 | CTQ48949.1 | JDO7802_00587 | JDO7802_00957 | Zc3h12a-like Ribonuclease NYN domain protein. | Hypothetical protein. | 0.550 |
CTQ48584.1 | CTQ51156.1 | JDO7802_00587 | JDO7802_03194 | Zc3h12a-like Ribonuclease NYN domain protein. | Hypothetical protein. | 0.400 |
CTQ48584.1 | trpA | JDO7802_00587 | JDO7802_00586 | Zc3h12a-like Ribonuclease NYN domain protein. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.773 |
CTQ48752.1 | CTQ48584.1 | JDO7802_00757 | JDO7802_00587 | Flagellar motor switch protein FliM. | Zc3h12a-like Ribonuclease NYN domain protein. | 0.486 |
CTQ48949.1 | CTQ48584.1 | JDO7802_00957 | JDO7802_00587 | Hypothetical protein. | Zc3h12a-like Ribonuclease NYN domain protein. | 0.550 |
CTQ51156.1 | CTQ48584.1 | JDO7802_03194 | JDO7802_00587 | Hypothetical protein. | Zc3h12a-like Ribonuclease NYN domain protein. | 0.400 |
trpA | CTQ48582.1 | JDO7802_00586 | JDO7802_00585 | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | Hypothetical protein. | 0.450 |
trpA | CTQ48584.1 | JDO7802_00586 | JDO7802_00587 | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | Zc3h12a-like Ribonuclease NYN domain protein. | 0.773 |