STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
siaT_3Neu5Ac permease. (436 aa)    
Predicted Functional Partners:
CTQ49035.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.952
dctP_2
C4-dicarboxylate-binding periplasmic protein precursor.
 
    0.906
dctP_1
C4-dicarboxylate-binding periplasmic protein precursor.
  
    0.753
yiaO_4
Extracytoplasmic solute receptor protein YiaO.
 
    0.670
kce_1
3-keto-5-aminohexanoate cleavage enzyme.
       0.594
CTQ51051.1
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM.
 
 0.568
dctP_3
C4-dicarboxylate-binding periplasmic protein precursor.
  
    0.518
CTQ49231.1
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM.
 
  0.502
yiaO_5
Extracytoplasmic solute receptor protein YiaO.
  
     0.479
CTQ48528.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.432
Your Current Organism:
Jannaschia donghaensis
NCBI taxonomy Id: 420998
Other names: J. donghaensis, JCM 14563, Jannaschia donghaensis Yoon et al. 2007, KCTC 12862, strain DSW-17
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