STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTQ49387.1L,D-transpeptidase catalytic domain. (160 aa)    
Predicted Functional Partners:
ribA
GTP cyclohydrolase-2; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
       0.861
yycF
Transcriptional regulatory protein YycF.
 
     0.621
CTQ48598.1
Hypothetical protein.
  
     0.481
CTQ49037.1
Putative membrane protein.
  
     0.479
CTQ49038.1
Hypothetical protein; N-terminal double-transmembrane domain.
  
     0.417
atpI
ATP synthase protein I; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.
  
     0.411
Your Current Organism:
Jannaschia donghaensis
NCBI taxonomy Id: 420998
Other names: J. donghaensis, JCM 14563, Jannaschia donghaensis Yoon et al. 2007, KCTC 12862, strain DSW-17
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