node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplC | rplD | JDO7802_02106 | JDO7802_02107 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Hypothetical protein; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplW | JDO7802_02106 | JDO7802_02108 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
rplC | rpmJ | JDO7802_02106 | JDO7802_01680 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Hypothetical protein; RRP-L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.999 |
rplC | rpsA | JDO7802_02106 | JDO7802_00676 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Hypothetical protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.999 |
rplC | rpsD | JDO7802_02106 | JDO7802_01964 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplC | rpsE | JDO7802_02106 | JDO7802_02127 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Hypothetical protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rplC | rpsJ | JDO7802_02106 | JDO7802_02105 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Hypothetical protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rplC | rpsO | JDO7802_02106 | JDO7802_00368 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
rplC | rpsP | JDO7802_02106 | JDO7802_00150 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
rplC | tufA | JDO7802_02106 | JDO7802_02103 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.999 |
rplD | rplC | JDO7802_02107 | JDO7802_02106 | Hypothetical protein; Forms part of the polypeptide exit tunnel. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
rplD | rplW | JDO7802_02107 | JDO7802_02108 | Hypothetical protein; Forms part of the polypeptide exit tunnel. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
rplD | rpmJ | JDO7802_02107 | JDO7802_01680 | Hypothetical protein; Forms part of the polypeptide exit tunnel. | Hypothetical protein; RRP-L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.999 |
rplD | rpsA | JDO7802_02107 | JDO7802_00676 | Hypothetical protein; Forms part of the polypeptide exit tunnel. | Hypothetical protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.999 |
rplD | rpsD | JDO7802_02107 | JDO7802_01964 | Hypothetical protein; Forms part of the polypeptide exit tunnel. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplD | rpsE | JDO7802_02107 | JDO7802_02127 | Hypothetical protein; Forms part of the polypeptide exit tunnel. | Hypothetical protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rplD | rpsJ | JDO7802_02107 | JDO7802_02105 | Hypothetical protein; Forms part of the polypeptide exit tunnel. | Hypothetical protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rplD | rpsO | JDO7802_02107 | JDO7802_00368 | Hypothetical protein; Forms part of the polypeptide exit tunnel. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
rplD | rpsP | JDO7802_02107 | JDO7802_00150 | Hypothetical protein; Forms part of the polypeptide exit tunnel. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
rplD | tufA | JDO7802_02107 | JDO7802_02103 | Hypothetical protein; Forms part of the polypeptide exit tunnel. | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.999 |