STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufBFeS cluster assembly protein SufB. (503 aa)    
Predicted Functional Partners:
sufC
Putative ATP-dependent transporter SufC.
 
 0.999
sufD
FeS cluster assembly protein SufD.
 
 
0.999
csd
Putative cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.987
iscA
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.919
iscS
Cysteine desulfurase.
  
  
 0.897
CTQ50599.1
SUF system FeS assembly protein, NifU family.
  
  
 0.874
iscR
HTH-type transcriptional regulator IscR.
     
 0.860
sufE
Cysteine desulfuration protein SufE.
 
   0.846
CTQ51045.1
FeS assembly SUF system protein.
 
   
 0.820
CTQ50457.1
Exosortase A system-associated hydrolase 1.
     
 0.794
Your Current Organism:
Jannaschia donghaensis
NCBI taxonomy Id: 420998
Other names: J. donghaensis, JCM 14563, Jannaschia donghaensis Yoon et al. 2007, KCTC 12862, strain DSW-17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.