Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aroQ | coaA | JDO7802_03229 | JDO7802_03230 | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | Pantothenate kinase. | 0.780 |
aroQ | selU | JDO7802_03229 | JDO7802_03231 | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | tRNA 2-selenouridine synthase; Belongs to the SelU family. | 0.671 |
coaA | aroQ | JDO7802_03230 | JDO7802_03229 | Pantothenate kinase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.780 |
coaA | selU | JDO7802_03230 | JDO7802_03231 | Pantothenate kinase. | tRNA 2-selenouridine synthase; Belongs to the SelU family. | 0.668 |
phnD_1 | selU | JDO7802_00022 | JDO7802_03231 | Phosphate-import protein PhnD precursor. | tRNA 2-selenouridine synthase; Belongs to the SelU family. | 0.409 |
selD | selU | JDO7802_03232 | JDO7802_03231 | Selenide, water dikinase. | tRNA 2-selenouridine synthase; Belongs to the SelU family. | 0.910 |
selU | aroQ | JDO7802_03231 | JDO7802_03229 | tRNA 2-selenouridine synthase; Belongs to the SelU family. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.671 |
selU | coaA | JDO7802_03231 | JDO7802_03230 | tRNA 2-selenouridine synthase; Belongs to the SelU family. | Pantothenate kinase. | 0.668 |
selU | phnD_1 | JDO7802_03231 | JDO7802_00022 | tRNA 2-selenouridine synthase; Belongs to the SelU family. | Phosphate-import protein PhnD precursor. | 0.409 |
selU | selD | JDO7802_03231 | JDO7802_03232 | tRNA 2-selenouridine synthase; Belongs to the SelU family. | Selenide, water dikinase. | 0.910 |