STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sugATrehalose transport system permease protein SugA. (288 aa)    
Predicted Functional Partners:
sugB_4
Trehalose transport system permease protein SugB.
 
  0.983
malK_3
Maltose/maltodextrin import ATP-binding protein MalK; Belongs to the ABC transporter superfamily.
 
  0.981
CTQ51388.1
Putative ABC transporter-binding protein precursor.
 
  0.961
mtlK_2
Mannitol 2-dehydrogenase.
 
     0.921
polS_2
Sorbitol dehydrogenase.
 
     0.874
CTQ51198.1
Putative ABC transporter-binding protein precursor.
  
  0.851
araQ_4
L-arabinose transport system permease protein AraQ.
 
  0.817
ycjP_3
Inner membrane ABC transporter permease protein YcjP.
  
  0.816
ugpC_3
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
  
  0.812
CTQ49482.1
Putative ABC transporter-binding protein precursor.
  
  0.804
Your Current Organism:
Jannaschia donghaensis
NCBI taxonomy Id: 420998
Other names: J. donghaensis, JCM 14563, Jannaschia donghaensis Yoon et al. 2007, KCTC 12862, strain DSW-17
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