STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH22635.1Hypothetical protein. (552 aa)    
Predicted Functional Partners:
SHG89533.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
     
 0.594
SHH30191.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
     
 0.594
SHH22667.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.592
SHH53133.1
2-Methylisocitrate lyase, PEP mutase family.
  
  
  0.494
SHH22600.1
Hypothetical protein.
       0.452
SHH50775.1
SnoaL-like domain-containing protein.
     
 0.416
SHH66838.1
Acyl-CoA hydrolase.
    
  0.404
Your Current Organism:
Chryseobacterium oranimense
NCBI taxonomy Id: 421058
Other names: C. oranimense, Chryseobacterium oranimense Hantsis-Zacharov et al. 2008, DSM 19055, LMG 24030, LMG:24030, strain H8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.