STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH93976.1Putative efflux protein, MATE family. (464 aa)    
Predicted Functional Partners:
SHG48757.1
Phytoene/squalene synthetase.
   
 
 0.640
SHH74668.1
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.605
SHH46320.1
Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.592
SHH93965.1
Ankyrin repeat-containing protein.
   
 
 0.555
SHH04856.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.512
SHH93994.1
Ribosomal small subunit protein bTHX.
       0.465
Your Current Organism:
Chryseobacterium oranimense
NCBI taxonomy Id: 421058
Other names: C. oranimense, Chryseobacterium oranimense Hantsis-Zacharov et al. 2008, DSM 19055, LMG 24030, LMG:24030, strain H8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.