STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP61101.1Regulatory protein, luxR family. (222 aa)    
Predicted Functional Partners:
SEQ61436.1
Signal transduction histidine kinase.
   
 0.976
SEQ78885.1
PAS domain S-box-containing protein.
  
 0.932
SEQ91678.1
PAS domain S-box-containing protein.
   
 0.842
SEQ87915.1
Signal transduction histidine kinase.
   
 0.837
SEQ32300.1
Signal transduction histidine kinase.
  
 0.828
SEQ86809.1
Regulatory protein, luxR family.
  
     0.723
SEQ43922.1
Signal transduction histidine kinase.
   
 0.709
SEQ49138.1
Tetratricopeptide repeat-containing protein.
   
 0.684
SEQ50782.1
Hypothetical protein; Manually curated.
  
 0.636
SEQ55946.1
Regulatory protein, luxR family.
  
     0.630
Your Current Organism:
Chryseobacterium halperniae
NCBI taxonomy Id: 421072
Other names: C. halperniae, Chryseobacterium halperniae (Shaked et al. 2010) Hahnke et al. 2017, DSM 19921, Epilithonimonas lactis, Epilithonimonas lactis Shaked et al. 2010, Epilithonimonas sp. H1, LMG 24401, LMG:24401, strain H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.