STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP74119.1Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily. (426 aa)    
Predicted Functional Partners:
SEQ32135.1
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
    
  0.572
SEP74091.1
Hypothetical protein.
       0.490
SER10624.1
Peptidase family M28.
  
  
  0.440
SER02805.1
Calcineurin-like phosphoesterase.
  
 
  0.437
SER02847.1
Phosphoinositide phospholipase C, Ca2+-dependent.
  
  
  0.427
Your Current Organism:
Chryseobacterium halperniae
NCBI taxonomy Id: 421072
Other names: C. halperniae, Chryseobacterium halperniae (Shaked et al. 2010) Hahnke et al. 2017, DSM 19921, Epilithonimonas lactis, Epilithonimonas lactis Shaked et al. 2010, Epilithonimonas sp. H1, LMG 24401, LMG:24401, strain H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.