STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCD-glucuronate isomerase. (467 aa)    
Predicted Functional Partners:
SEP89361.1
Tagaturonate reductase.
 
 
 0.989
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.951
SEP89482.1
2-dehydro-3-deoxygluconokinase.
 
   
 0.879
SEP89422.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
 
   
 0.873
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.817
SEP89335.1
Altronate hydrolase.
 
  
 0.799
SEP89586.1
Gluconate 5-dehydrogenase.
 
   
 0.750
SER04323.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
   
 0.696
SER04264.1
Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
 
 0.616
SER08128.1
Beta-galactosidase.
  
 
 0.616
Your Current Organism:
Chryseobacterium halperniae
NCBI taxonomy Id: 421072
Other names: C. halperniae, Chryseobacterium halperniae (Shaked et al. 2010) Hahnke et al. 2017, DSM 19921, Epilithonimonas lactis, Epilithonimonas lactis Shaked et al. 2010, Epilithonimonas sp. H1, LMG 24401, LMG:24401, strain H1
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