Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEP70085.1 | SEP91024.1 | SAMN04488097_0366 | SAMN04488097_1059 | DNA topoisomerase-3. | HRDC domain-containing protein. | 0.806 |
SEP70085.1 | SEQ66323.1 | SAMN04488097_0366 | SAMN04488097_2804 | DNA topoisomerase-3. | Hypothetical protein. | 0.474 |
SEP70085.1 | SER11073.1 | SAMN04488097_0366 | SAMN04488097_3930 | DNA topoisomerase-3. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.532 |
SEP70085.1 | polA | SAMN04488097_0366 | SAMN04488097_3918 | DNA topoisomerase-3. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.751 |
SEP70085.1 | recA | SAMN04488097_0366 | SAMN04488097_2203 | DNA topoisomerase-3. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.731 |
SEP70085.1 | sbcD | SAMN04488097_0366 | SAMN04488097_0255 | DNA topoisomerase-3. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.474 |
SEP91024.1 | SEP70085.1 | SAMN04488097_1059 | SAMN04488097_0366 | HRDC domain-containing protein. | DNA topoisomerase-3. | 0.806 |
SEP91024.1 | SEQ46884.1 | SAMN04488097_1059 | SAMN04488097_2153 | HRDC domain-containing protein. | DNA topoisomerase-1. | 0.771 |
SEP91024.1 | SEQ66323.1 | SAMN04488097_1059 | SAMN04488097_2804 | HRDC domain-containing protein. | Hypothetical protein. | 0.764 |
SEP91024.1 | SEQ92768.1 | SAMN04488097_1059 | SAMN04488097_3400 | HRDC domain-containing protein. | DNA topoisomerase-3. | 0.806 |
SEP91024.1 | SER11073.1 | SAMN04488097_1059 | SAMN04488097_3930 | HRDC domain-containing protein. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.857 |
SEP91024.1 | mutL | SAMN04488097_1059 | SAMN04488097_1586 | HRDC domain-containing protein. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.800 |
SEP91024.1 | polA | SAMN04488097_1059 | SAMN04488097_3918 | HRDC domain-containing protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.948 |
SEP91024.1 | recA | SAMN04488097_1059 | SAMN04488097_2203 | HRDC domain-containing protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.866 |
SEP91024.1 | sbcD | SAMN04488097_1059 | SAMN04488097_0255 | HRDC domain-containing protein. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.764 |
SEP91024.1 | topA | SAMN04488097_1059 | SAMN04488097_1370 | HRDC domain-containing protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.819 |
SEQ46884.1 | SEP91024.1 | SAMN04488097_2153 | SAMN04488097_1059 | DNA topoisomerase-1. | HRDC domain-containing protein. | 0.771 |
SEQ46884.1 | SEQ66323.1 | SAMN04488097_2153 | SAMN04488097_2804 | DNA topoisomerase-1. | Hypothetical protein. | 0.422 |
SEQ46884.1 | polA | SAMN04488097_2153 | SAMN04488097_3918 | DNA topoisomerase-1. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.513 |
SEQ46884.1 | sbcD | SAMN04488097_2153 | SAMN04488097_0255 | DNA topoisomerase-1. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.422 |
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