STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ09921.1Outer membrane receptor proteins, mostly Fe transport. (717 aa)    
Predicted Functional Partners:
SEQ03723.1
VanZ like family protein.
  
     0.726
SEQ09897.1
Outer membrane receptor proteins, mostly Fe transport.
 
   
0.712
SEQ97266.1
Hypothetical protein.
  
     0.708
SEQ08695.1
Hypothetical protein.
  
     0.695
SEQ22225.1
Protein of unknown function.
  
     0.689
SEQ93485.1
Hypothetical protein.
  
    0.659
SEQ98503.1
Methyltransferase, FkbM family.
  
     0.654
SEP59515.1
Hypothetical protein.
  
     0.625
SEP62859.1
Protein TonB.
  
   0.616
SEP61673.1
Hyperosmotically inducible protein.
  
     0.615
Your Current Organism:
Chryseobacterium halperniae
NCBI taxonomy Id: 421072
Other names: C. halperniae, Chryseobacterium halperniae (Shaked et al. 2010) Hahnke et al. 2017, DSM 19921, Epilithonimonas lactis, Epilithonimonas lactis Shaked et al. 2010, Epilithonimonas sp. H1, LMG 24401, LMG:24401, strain H1
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