STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ11090.1Protein involved in gliding motility EpsA. (286 aa)    
Predicted Functional Partners:
SEQ11063.1
Protein involved in gliding motility EpsB.
 
 0.997
SEP78345.1
Capsular exopolysaccharide family.
 
 0.977
SEQ06411.1
Capsular exopolysaccharide family.
 
 0.977
SEP78315.1
Capsular exopolysaccharide family.
 
 0.976
SEP78288.1
Polysaccharide export outer membrane protein.
  
  
 
0.928
SEQ11262.1
EpsG family protein.
 
     0.891
SEQ11024.1
Outer membrane protein beta-barrel domain-containing protein.
 
     0.800
SEQ11124.1
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; Manually curated.
 
     0.777
SEQ11190.1
Arginase family enzyme.
 
     0.772
SEQ18172.1
Hypothetical protein.
  
 
   0.758
Your Current Organism:
Chryseobacterium halperniae
NCBI taxonomy Id: 421072
Other names: C. halperniae, Chryseobacterium halperniae (Shaked et al. 2010) Hahnke et al. 2017, DSM 19921, Epilithonimonas lactis, Epilithonimonas lactis Shaked et al. 2010, Epilithonimonas sp. H1, LMG 24401, LMG:24401, strain H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.