STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ22515.1Iron complex outermembrane recepter protein. (814 aa)    
Predicted Functional Partners:
SEP73278.1
Fucose permease.
  
     0.535
SEQ25708.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.531
SEQ60410.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.514
SEQ82644.1
S1/P1 Nuclease.
  
     0.508
SEP76681.1
SusD family protein.
  
 
   0.483
SEQ22485.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
       0.481
SER10558.1
Fucose permease; Manually curated.
  
     0.467
SEP89093.1
Hypothetical protein.
  
 
   0.460
SEP73342.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.438
SER02726.1
Starch-binding associating with outer membrane.
  
 
   0.427
Your Current Organism:
Chryseobacterium halperniae
NCBI taxonomy Id: 421072
Other names: C. halperniae, Chryseobacterium halperniae (Shaked et al. 2010) Hahnke et al. 2017, DSM 19921, Epilithonimonas lactis, Epilithonimonas lactis Shaked et al. 2010, Epilithonimonas sp. H1, LMG 24401, LMG:24401, strain H1
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