STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ59877.1DNA-binding transcriptional regulator, XRE-family HTH domain; Manually curated. (258 aa)    
Predicted Functional Partners:
SEQ59936.1
DNA polymerase III, alpha subunit.
 
     0.864
SEQ59852.1
Alkylated DNA repair dioxygenase AlkB.
       0.773
SEP87645.1
Hypothetical protein.
 
     0.749
dinB-2
DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
 
     0.736
SEP70895.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.574
SER12751.1
Amidohydrolase, PncC family; Belongs to the CinA family.
    
 0.574
SEQ59832.1
Por secretion system C-terminal sorting domain-containing protein.
       0.480
SEQ21403.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
  
 0.448
SEQ61202.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.423
SER10865.1
Hypothetical protein.
  
     0.407
Your Current Organism:
Chryseobacterium halperniae
NCBI taxonomy Id: 421072
Other names: C. halperniae, Chryseobacterium halperniae (Shaked et al. 2010) Hahnke et al. 2017, DSM 19921, Epilithonimonas lactis, Epilithonimonas lactis Shaked et al. 2010, Epilithonimonas sp. H1, LMG 24401, LMG:24401, strain H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.